My work in the field of ecological and evolutionary genomics centers around characterizing adaptive transcriptional responses of animals to their environment. I study the small crustacean Daphnia pulex, a cyclical parthenogen (it alternate rounds of sexual and asexual reproduction). Typically females reproduce clonally under benign environmental conditions, but as autumn approaches, they begin to produce either male offspring or haploid eggs which require fertilization. Once fertilized, sexual eggs are laid in a state of endogenous dormancy (diapause) so they can overwinter as ponds freeze. I am interested in how the genes and gene networks responsible for these processes respond in a mechanistic sense to evolutionary and ecological pressures. Specifically, my research involves the following questions:
Comparison of male-biased and female-biased genes from D. pulex with respect to homology of those genes vs. D. melanogaster. Genes were binned according to bit score of alignment (weak, strong, no homology) and degree of sex bias in D. pulex. Female-biased genes are more likely to have identifiable homologs in flies than male-biased genes. Conversely, male-biased genes are far less likely to have closely related sequence match in D. melanogaster.