Here are some recent EM-containing publications from people using the microscopy facility. Starting in 2010, all the publications listed here have at least some electron microscopy done using instruments at IUB. Clicking on the title of an article will take you to the website of the publisher where you should be able to obtain a PDF copy of the journal article. If you are unable to obtain a copy that way, please contact the highlighted author(s) for further information. Easy links to an IU web page for many of the authors is available here. Finally, publications that do not have an IUB-associated name highlighted contain electron microscopy work done using the JEOL JEM 3200FS in Simon Hall.

2012

articles of interest for biology/structural biology EM:

Brown, P.J.B., de Pedro, M.A., Kysela, D.T., Van der Henst, C., Kim, J., De Bolle, X., Fuqua, C. and Brun, Y.V. (2012) Polar growth in the Alphaproteobacterial order Rhizobiales. Proc. Nat. Acad. Sci. USA 109, 1697-1701.

Cunningham, J.A., Thomas, C.W., Bengtson, S., Marone, F., Stampanoni, M., Turner, F.R., Bailey, J.V., Raff, R.A., Raff, E.C. and Donoghue, P.C.J (2012) Experimental taphonomy of giant sulphur bacteria: implications for the interpretation of the embryo-like Ediacaran Doushantuo fossils. Proc. Royal Soc. B. Biol. Sci. 279, 1857-1864.

Mim, C., Cui, H., Gawronski-Salerno, J.A., Frost, A., Lyman, E., Voth, G.A. and Unger, V.M. (2012) Structural Basis of Membrane Bending by the N-BAR Protein Endophilin. Cell 149, 137-146.

Snyder, A.J., Sokoloski, K.J. and Mukhopadhyay, S. (2012) Mutating conserved cysteines in the alphavirus E2 glycoprotein causes virus-specific assembly defects. J. Virol. 86, 3100-11.

Subba-Reddy, C.V., Tragesser, B., Xu, Z., Stein, B., Ranjith-Kumar, C.T. and Kao, C.C. (2012) RNA Synthesis by the Brome Mosaic Virus RNA-Dependent RNA Polymerase in Human Cells Reveals Requirements for De Novo Initiation and Protein-Protein Interaction. J. Virol. 86, 4317-4327.

Terrell, D., Xie, B.T., Workman, M., Mahato, S., Zelhof, A., Gebelein, B. and Cook, T. (2012) OTX2 and CRX rescue overlapping and photoreceptor-specific functions in the Drosophila eye. Dev. Dynamics 241, 215-228.

articles of interest for materials science EM:

Budgin, A.M., Kabachii, Y.A.,; Shifrina, Z.B., Valetsky, P.M., Kochev, S.S., Stein, B.D., Malyutin, A. and Bronstein, L.M. (2012) Functionalization of Magnetic Nanoparticles with Amphiphilic Block Copolymers: Self-Assembled Thermoresponsive Submicrometer Particles. Langmuir 28, 4142-4151.

DeSantis, C.J. and Skrabalak, S.E. (2012) Size-Controlled Synthesis of Au/Pd Octopods with High Refractive Index Sensitivity. Langmuir XX, XXXX-XXXX.

DeSantis, C.J. Sue, A.C. Bower, M.M. and Skrabalak, S.E. (2012) Seed-Mediated Co-reduction: A Versatile Route to Architecturally Controlled Bimetallic Nanostructures. ACS Nano 6, 2617–2628.

Kuchkina, N.V., Morgan, D.G., Stein, B.D., Puntus, L.N., Sergeev, A.M., Peregudov, A.S., Bronstein, L.M. and Shifrina, Z.B. (2012) Polyphenylenepyridyl dendrimers as stabilizing and controlling agents for CdS nanoparticle formation. Nanoscale 4, 2378-2386.

Mann, A.K.P., Steinmiller, E.M.P. and Skrabalak, S.E. (2012) Elucidating the Structure-Dependent Photocatalytic Properties of Bi2WO6: a Synthesis Guided Investigation. Dalton Transaction (New Talents America's Issue), 2012, In Press.

Tsvetkova, I.B., Matveeva, V.G., Doluda, V.Y., Bykov, A.V., Sidorov, A.I., Schennikov, S.V., Sulman, M.G., Valetsky, P.M., Stein, B.D., Chen, C.H., Sulman, E.M. and Bronstein, L.M. (2012) Pd(II) nanoparticles in porous polystyrene: factors influencing the nanoparticle size and catalytic properties. J. Mat Chem. 22, 6441-6448.

2011

articles of interest for biology/structural biology EM:

Chen, C., Wang, J.C.-Y. and Zlotnic, A. (2011) A kinase chaperones hepatitis B virus capsid assembly and captures capsid dynamics in vitro. PLOS Pathogens 7, e1002388.

Cheng, F. and Mukhopadhyay, S. (2011) Generating enveloped virus-like particle with in vitro assembled cores. Virology 413, 153-60.

Heaslip, A.T., Nishi, M., Stein, B., Hu, K. (2011) The Motility of a Human Parasite, Toxoplasma gondii, Is Regulated by a Novel Lysine Methyltransferase. PLOS Pathogens 7,  e1002201.

Huang, X.L., Stein, B.D., Cheng, H., Malyutin, A., Tsvetkova, I.B., Baxter, D.V., Remmes, N.B., Verchot, J., Kao, C., Bronstein, L.M. and Dragnea, B. (2011) Magnetic Virus-like Nanoparticles in N. benthamiana Plants: A New Paradigm for Environmental and Agronomic Biotechnological Research. ACS NANO  5, 4037-4045.

Katen, S.P. Chirapu, S.R. Finn, M.G. and Zlotnick, A. (2011) Trapping of hepatitis B virus capsid assembly intermediates by phenylpropenamide assembly accelerators. ACS Chemical Biol. 5, 1125–1136.

Ruppel, N.J., Logsdon, C.A., Whippo, C.W., Inoue, K. and Hangarter, R.P. (2011) A Mutation in Arabidopsis SEEDLING PLASTID DEVELOPMENT1 Affects Plastid Differentiation in Embryo-Derived Tissues during Seedling Growth. Plant Phys. 155, 342-353.

articles of interest for materials science EM:

Biswas, S., Gordon, L.E., Clark, G.J. and Nantz, M.H. (2011) Click Assembly of Magnetic Nanovectors for Gene Delivery. Biomaterials 32, 2683-2688.

Bronstein, L.M., Atkinson, J.E., Malyutin, A.G., Kidwai, F., Stein, B.D., Morgan, D.G., Perry, J.M. and Karty, J.A. (2011) Nanoparticles by Decomposition of Long Chain Iron Carboxylates: From Spheres to Stars and Cubes. Langmuir 27, 3044-3050.

DeSantis, C. J., Peverly, A. A., Peters, D. G. and Skrabalak, S. E. (2011) Octopods versus Concave Nanocrystals: Control of Morphology by Manipulating the Kinetics of Seeded Growth via Co-Reduction. Nano Letters 11, 2164-2168.

Goicochea, N.L., Datta, S.A.K., Ayaluru, M., Kao, C., Rein, A. and Dragnea, B. (2011) Structure and Stoichiometry of Template-Directed Recombinant HIV-1 Gag Particles. J. Mol. Bio. 410, 667-680.

Mann, A.K.P. and Skrabalak, S.E. (2011) Synthesis of Single-Crystalline Nanoplates by Spray Pyrolysis: a Metathesis Route to Bi2WO6. Chem. Mater. 23, 1017-1022.

Morton, K.C., Morris, C.A., Derylo, M.A., Thakar, R . and Baker, L.A. (2011) Carbon Electrode Fabrication from Pyrolyzed Parylene C. Anal. Chem. 83, 5447-5452.

Ortiz, N. and Skrabalak, S. E. (2011) Controlling the Growth Kinetics of Nanocrystals via Galvanic Replacement: Synthesis of Au Tetrapods and Star-shaped Decahedra. Crystal Growth & Design 11, 3545-3550.

Sulman, E.M., Ivanov, A.A., Chernyavsky, V.S., Sulman, M.G., Bykov, A.I., Sidorov, A.I., Doluda, V.Y., Matveeva, V.G., Bronstein, L.M., Stein, B.D. and Kharitonov, A.S. (2011) Kinetics of phenol hydrogenation over Pd-containing hypercrosslinked polystyrene. Chem. Eng. J. 176-177, 33-42.

Vieweger, M., Goicochea, N., Koh, E.S. and Dragnea, B. (2011) Photothermal Imaging and Measurement of Protein Shell Stoichiometry of Single HIV-1 Gag Virus-like Nanoparticles. ACS Nano 5, 7324-7333.

Walker, J.M., Gou, L.F., Bhattacharyya, S., Lindahl, S.E. and Zaleski, J.M. (2011) Photothermal Plasmonic Triggering of Au Nanoparticle Surface Radical Polymerization. Chem. Mater. 23, 5275-5281.

2010

articles of interest for biology/structural biology EM:

Heaslip, A. T., Dzierszinski, F., Stein, B. and Hu, K. (2010) TgMORN1 is a key organizer for the basal complex of Toxoplasma gondii.  PLoS Pathogens  6, e1000754

Liu, X., Afrane, M., Clemmer, D. E., Zhong, G. and Nelson, D. E. (2010) Identification of Chlamydia trachomatis Outer Membrane Complex Proteins by Differential Proteomics. J. Bact. 192, 2852-2860.

Mishra, M., Oke, A., Lebel, C., McDonald, E. C., Plummer, Z., Cook, T. A. and Zelhof, A. C. (2010)  Pph13 and Orthodenticle define a dual regulatory pathway for photoreceptor cell morphogenesis and function. Development 137, 2895-2904.

Porterfield, J.Z., Dhason, S.M., Loeb, D.D. Nassal, M., Stray, S.J. and Zlotnick, A. (2010) Full-length hepatitis B virus core protein packages viral and heterologous RNA with similarly high levels of cooperativity. J. Virol. 84, 7174-7184.

Salzer, C. L., Elias Y. and Kumar J. P. (2010) The Retinal Determination Gene eyes absent Is Regulated by the EGF Receptor Pathway Throughout Development in Drosophila. Genetics 184, 185-197.

articles of interest for materials science EM:

Bronstein, L.M., Shtykova, E.V., Malyutin, A., Dyke, J.C., Gunn, E., Gao, X., Stein B., Konarev, P.V., Dragnea, B. and Svergun, D.I. (2010) Hydrophilization of Magnetic Nanoparticles with Modified Alternating Copolymers. Part 1: The Influence of the Grafting. Journal of Physical Chemistry C  114, 21900-21907.

Peterson, A.K., Morgan, D.G. and Skrabalak, S.E. (2010) Aerosol Synthesis of Porous Particles Using Simple Salts as a Pore Template. Langmuir 26, 8804-8809.

Shtykova E.V., Malyutin A., Dyke J., Stein B., Konarev P.V., Dragnea B., Svergun D.I. and Bronstein L.M. (2010) Hydrophilization of Magnetic Nanoparticles with Modified Alternating Copolymers. Part 2: Behavior in Solution. Journal of Physical Chemistry C 114,  21908-21913.

Sulman E.M., Matveeva V.G., Doluda V.Y.,  Sidorov A.I., Lakina N.V., Bykov A.V., Sulman M.G., Valetsky P. M., Kustov L.M., Tkachenko O.P., Stein, B.D. and Bronstein L. M. (2010) Efficient polymer-based nanocatalysts with enhanced catalytic performance in wet air oxidation of phenol. Applied Catalysis B - Environmental 94, 200-210.

2009

articles of interest for biology/structural biology EM:

Bourne, C.R., Katen, S.P., Fulz, M.R., Packianathan, C. and Zlotnick, A. (2009) A Mutant Hepatitis B Virus Core Protein Mimics Inhibitors of Icosahedral Capsid Self-Assembly. Biochemistry 48, 1736-1742.

Ranjith-Kumar, C.T., Murali, A., Dong, W., Srisathiyanarayanan, D., Vaughan, R., Ortiz-Alacantara, J., Bhardwaj, K., Li., X., Li, P. and Kao, C.C. 2009. Agonists and Antagonists Recognition by RIG-I, a  Cytoplasmic Innate Immunity Receptor. J. Biol. Chem.  284, 1155-1165.

Wei, Hui, Cheng, R.H., Berriman, J., Rice, W.J., Stokes, D.L., Katz, A., Morgan, D.G. and Gottlieb, P. (2009) Three-Dimensional Structure of the Enveloped Bacteriophage φ12: An Incomplete T=13 Lattice Is Superposed on an Enclosed T=1 Shell. PLoS ONE 4, e6850.

Yi, G. H., Letteney, E., Kim, C.-H., and Kao, C.C. (2009) Brome Mosaic  Virus Capsid Protein Regulates Translation of Viral Replication  Proteins by Binding to the Replicase Assembly RNA Element.  RNA 15,  615-626.

Yi, G., Vaughan, R.C., Yarbrough, I., Dharmaian, S., and Kao, C.C. (2009) RNA  Binding by the Brome Mosaic Virus Capsid Protein and the Regulation  of Viral RNA Accumulation. J. Mol. Biol. 391, 314-326.

articles of interest for materials science EM:

Herrera, M., Ramasse, Q.M., Morgan, D.G., Gonzalez, D., Pizarro, J., Yanez, A., Galindo, P., Garcia, R., Du, M.H., Zhang, S.B., Hopkinson, M., and . Browning, N.D (2009) Atomic scale high-angle annular dark field STEM analysis of the N configuration in dilute nitrides of GaAs. Physical Review B 80

Morgan, D.G., Ramasse, Q.M. and Browning, N.D. (2009) Application of Two-dimensional Crystallography and Image Processing to Atomic Resolution Z-Contrast Images. J. Electron Microscopy 58, 223-244.

Reed, B.W., Morgan, D.G., Okamoto, N.L., Kulkarni,A., Gates, B.C. and Browning, N.D. (2009) Validation and generalization of a method for precise size measurements of metal nanoclusters on supports. Ultramicroscopy 110, 48-60.

Ortalan,V., Herrera, M., Morgan, D.G. and. Browning, N.D.(2009) Application of image processing to STEM tomography of low-contrast materials. Ultramicroscopy 110, 67-81.

Sulman, E.M., Matveeva, V.G., Sulman, M.G., Demidenko, G.N., Valetsky, P.M., Stein, B., Mates, T., and Bronstein, L.M. (2009) Influence of Heterogenization on Catalytic Behavior of Mono- and Bimetallic Nanoparticles Formed in Poly(styrene)-block-poly(4-vinylpyridine) Micelles. J. Catalysis 262, 150-158.

2008

articles of interest for biology/structural biology EM:

Bourne, C.R., Lee, S., Venkataiah, B., Lee, A., Korba, B., Finn,  M.G., and Zlotnick, A. (2008) Small-Molecule Effectors of Hepatitis B  Virus Capsid Assembly Give Insight Into Virus Lifecycle. J. Virol.  82, 10262-10270.

Li, C., Wolgemuth C.W., Marko, M., Morgan, D.G. and Charon, N.W. (2008) Genetic Analysis of Spirochete Flagellin Proteins and Their Involvement in Motility, Filament Assembly, and Flagellar Morphology. J. Bact. 190, 5607-5615.

Gangloff, M., Murali, A., Xiong, J., Arnot, C.J., Weber, A.N., Sandercock, A.M., Robinson, C.V., Sarisky, R.T., A. Holzenburg, A., Kao, C. and Gay, N.J. (2008) Structural Insight into the  Mechanism of Activation of the Toll Receptor by the Dimeric Ligand  Spätzle.  J. Biol. Chem. 283, 14629-14635.

Mukherjee, S., Thorsteinsson, M.V., Johnston, L.B., DePhillips, P.A., and Zlotnick, A. (2008) A Quantitative Description of In Vitro Assembly of Human Papillomavirus 16 Virus-like Particles. J. Mol.  Biol. 381, 229-237.

Murali, A., Li, X., Ranjith-Kumar, C.T., Bhardwaj, K., Holzenburg, A., Li, P., and Kao, C. (2008)  Structure and Function of LGP2, a DExD/H  Helicase that Regulates the Innate Immunity Response. J. Biol. Chem.  283, 15825-15833.

Toh, E, Kurtz, H.D., Jr., and Brun, Y.V. (2008)  Characterization of  the Caulobacter crescentus Holdfast Polysaccharide Biosynthesis  Pathway Reveals Significant Redundancy in the Initiating  Glycosyltransferase and Polymerase steps.  J. Bact.  190, 7219-7231.

articles of interest for materials science EM:

Aberg, C.M., Seyam, M.A., Lassell, S.A., Bronstein, L.M., and Spontak, R.J. (2008) In situ Growth of Pd Nanoparticles in Crosslinked Polymer Matrices. Macromol. Rapid. Comm 29, 1926-1931.

Azzam, T., Bronstein, L., and Eisenberg, A. (2008) Water-Soluble Surface-Anchored Gold and Palladium Nanoparticles Stabilized by Exchange of Low Molecular Weight Ligands with Biamphiphilic Triblock Copolymers. Langmuir 24, 6521-6529.

Bronstein, L.M., Kostylev, M., Shtykova, E.V., Vlahu, T., Huang, X., Stein, B.D., Bykov, A., Remmes, N.B., Baxter, D.V., and Svergun, D.I. (2008) Mixed Co/Fe Oxide Nanoparticles in Block Copolymer Micelles. Langmuir 24, 12618-12626.

Herrera, M., Ortalan, V., Morgan, D.G., Browning, N.D. and Rupich, M.W. (2008) Observation of the Three-Dimensional Distribution of Flux-Pinning Centers in Dy-doped UBa2Cu3O7-x Coated Conductors.  J. App. Physics 103, 084301.

Korte, K., Skrabalak, S.E. and Xia, Y. (2008) Rapid Synthesis of Silver Nanowires by a CuCl- or CuCl2-Mediated Process. J. Mater. Chem. 18, 437-441.

Okamoto, N.L, Reed, B.W., Mehraeen, S., Kulkarni, A., Morgan, D.G., Gates, B.C. and Browning, N.D. (2008) Determination of Nanocluster Sixes from Dark-Field Scanning Transmission Electron Microscopy Images. J Phys. Chem. C 112, 1759-1763.

Shtykova, E.V., Huang, X., Gao, X., Dyke, J C., Schmucker, A.L., Dragnea, B., Remmes, N., Baxter, D.V., Stein, B., Konarev, P.V., Svergun, D.I., and Bronstein, L.M. (2008) Hydrophilic Monodisperse Magnetic Nanoparticles Protected by an Amphiphilic Alternating Copolymer. J. Phys. Chem. C 112, 16809-16817.


Wang, Y., Camargo, P.H.C., Skrabalak, S.E., Gu, H. and Xia, Y. (2008) A Facile, Water-Based Synthesis of Highly Branched Nanostructures of Silver. Langmuir 24, 12042-12046.

2007

articles of interest for biology/structural biology EM:

Goicochea, N.L., De, M., Rotello, V.M., Mukhopadhyay, S., and Dragnea, B. (2007) Core-like Particles of an Enveloped Animal Virus Can Self-assemble Efficiently on Artificial Templates. Nano Letters 7, 2281-2290.

Li, Z., Trimble, M., Brun, Y.V., and Jensen, G. (2007)  The Structure of FtsZ Filaments in vivo Suggests a Force-Generating Role in Cell Division.  EMBO Journal 26, 4694-4708.

Yi, G. and Kao, C. (2007). Selective Repression of Translation by the Brome Mosaic Virus 1a RNA Replication Protein. J. Virol. 81, 1601-1609.

articles of interest for materials science EM:

Bang, J.H., Han, K., Skrabalak, S.E., Kim, H. and Suslick, K.S. (2007) Porous Carbon Supports Prepared by Ultrasonic Spray Pyrolysis for Direct Methanol Fuel Cell Electrodes. J. Phys. Chem. C 111, 10959-10964.

Bronstein, L.M., Huang, X., Retrum, J., Schmucker, A., Pink, M., Stein, B.D., and Dragnea, B. (2007) Influence of Iron Oleate Complex Structure on Iron Oxide Nanoparticle Formation. Chem. Mater. 19, 3624-3632.

Goicochea, N.L., De, M., Rotello, V.M., Mukhopadhyay, S., and Dragnea, B. (2007) Core-like Particles of an Enveloped Animal Virus Can Self-assemble Efficiently on Artificial Templates. Nano Letters 7, 2281-2290.

Huang, X., Bronstein, L.M., Retrum, J., Dufort, C., Tsvetkova, I., Aniagyei, S., Stein, B., Stucky, G., McKenna, B., Remmes, N., Baxter, D., Kao, C.C., and Dragnea, B. (2007) Self-Assembled Virus-like Particles with Magnetic Cores. Nano Letters 7 2407–2416.

Skrabalak, S.E., Au, L., Li, X. and Xia, Y. (2007) Facile Synthesis of Ag Nanocubes and Au Nanocages. Nature Protocols 2, 2182-2190.

Shtykova, E.V., Huang, X., Remmes, N., Baxter, D., Stein, B., Dragnea, B., Svergun, D.I., and Bronstein, L.M. (2007) Structure and Properties of Iron Oxide Nanoparticles Encapsulated by Phospholipids with Poly(ethylene glycol) Tails. J. Phys. Chem. C 111, 18078-18086.

Soo, P.L., Sidorov, S.N., Mui, J., Bronstein, L.M., Vali, H., Eisenberg, A. and Maysinger, D. (2007) Gold-Labeled Block Copolymer Micelles Reveal Gold Aggregates at Multiple Subcellular Sites. Langmuir 23, 4830-4836.

Tsvetkova, I.B., Bronstein, L.M., Sidorov, S.N., Lependina, O.L., Sulman, M.G., Valetsky, P.M., Stein, B., Nikoshvili, L.Zh., Matveeva, V.G., Sidorov, A.I., Tikhonov, B.B., Demidenko, G.N., Kiwi-Minsker, L., and Sulman, E.M. (2007) Structure and Behavior of Nanoparticulate Catalysts Based on Ultrathin Chitosan Layers. J. Molec. Catal. A: Chem. 276, 116-129.

Yang, X., Skrabalak, S.E., Stein, E., Li, Z.-Y., Xia, Y. and Wang, L.V. (2007) Photoacoustic Tomography of a Rat Cerebral Cortex in vivo with Au Nanocages as an Optical Contrast Agent. Nano Letters 7, 3798-3802.