Here are some recent EM-containing publications from people using the microscopy facility. Starting in 2010, all the publications listed here have at least some electron microscopy done using instruments at IUB. Clicking on the title of an article will take you to the website of the publisher where you should be able to obtain a PDF copy of the journal article. If you are unable to obtain a copy that way, please contact the highlighted author(s) for further information. Easy links to an IU web page for most of the authors is available here. Finally, publications that do not have an IUB-associated name highlighted contain electron microscopy work done using the JEOL JEM 3200FS in Simon Hall.

2012

articles of interest for biology/structural biology EM:

articles of interest for materials science EM:

2011

articles of interest for biology/structural biology EM:

Chen, C., Wang, J.C.-Y. and Zlotnic, A. (2011) A kinase chaperones hepatitis B virus capsid assembly and captures capsid dynamics in vitro. PLOS Pathogens 7, e1002388.

Cheng, F. and Mukhopadhyay, S. (2011) Generating enveloped virus-like particle with in vitro assembled cores. Virology 413 153-60.

Heaslip, A.T., Nishi, M., Stein, B., Hu, K. (2011) The Motility of a Human Parasite, Toxoplasma gondii, Is Regulated by a Novel Lysine Methyltransferase. PLOS Pathogens 7,  e1002201.

Huang, X.L., Stein, B.D., Cheng, H., Malyutin, A., Tsvetkova, I.B., Baxter, D.V., Remmes, N.B., Verchot, J., Kao, C., Bronstein, L.M., Dragnea, B. (2011) Magnetic Virus-like Nanoparticles in N. benthamiana Plants: A New Paradigm for Environmental and Agronomic Biotechnological Research. ACS NANO  5, 4037-4045.

Katen, S.P. Chirapu, S.R. Finn, M.G. and Zlotnick, A. (2011) Trapping of hepatitis B virus capsid assembly intermediates by phenylpropenamide assembly accelerators. ACS Chemical Biol. 5, 1125–1136.

articles of interest for materials science EM:

Biswas, S., Gordon, L.E., Clark, G.J. and Nantz, M.H. (2011) Click Assembly of Magnetic Nanovectors for Gene Delivery. Biomaterials 32, 2683-2688.

Bronstein, L.M., Atkinson, J.E., Malyutin, A.G., Kidwai, F., Stein, B.D., Morgan, D.G., Perry, J.M. and Karty, J.A. (2011) Nanoparticles by Decomposition of Long Chain Iron Carboxylates: From Spheres to Stars and Cubes. Langmuir 27, 3044-3050.

DeSantis, C. J., Peverly, A. A., Peters, D. G. and Skrabalak, S. E. (2011) Octopods versus Concave Nanocrystals: Control of Morphology by Manipulating the Kinetics of Seeded Growth via Co-Reduction. Nano Letters 11, 2164-2168.

Mann, A.K.P. and Skrabalak, S.E. (2011) Synthesis of Single-Crystalline Nanoplates by Spray Pyrolysis: a Metathesis Route to Bi2WO6. Chemistry of Materials 23, 1017-1022.

Ortiz, N. and Skrabalak, S. E. (2011) Controlling the Growth Kinetics of Nanocrystals via Galvanic Replacement: Synthesis of Au Tetrapods and Star-shaped Decahedra. Crystal Growth & Design 11, 3545-3550.

2010

articles of interest for biology/structural biology EM:

Heaslip, A. T., Dzierszinski, F., Stein, B. and Hu, K. (2010) TgMORN1 is a key organizer for the basal complex of Toxoplasma gondii.  PLoS Pathogens  6, e1000754

Liu, X., Afrane, M., Clemmer, D. E., Zhong, G. and Nelson, D. E. (2010) Identification of Chlamydia trachomatis Outer Membrane Complex Proteins by Differential Proteomics. J. Bact. 192, 2852-2860.

Mishra, M., Oke, A., Lebel, C., McDonald, E. C., Plummer, Z., Cook, T. A. and Zelhof, A. C. (2010)  Pph13 and Orthodenticle define a dual regulatory pathway for photoreceptor cell morphogenesis and function. Development 137, 2895-2904.

Porterfield, J.Z., Dhason, S.M., Loeb, D.D. Nassal, M., Stray, S.J. and Zlotnick, A. (2010) Full-length hepatitis B virus core protein packages viral and heterologous RNA with similarly high levels of cooperativity. J. Virol. 84, 7174-7184.

Salzer, C. L., Elias Y. and Kumar J. P. (2010) The Retinal Determination Gene eyes absent Is Regulated by the EGF Receptor Pathway Throughout Development in Drosophila. Genetics 184, 185-197.

articles of interest for materials science EM:

Bronstein, L.M., Shtykova, E.V., Malyutin, A., Dyke, J.C., Gunn, E., Gao, X., Stein B., Konarev, P.V., Dragnea, B. and Svergun, D.I. (2010) Hydrophilization of Magnetic Nanoparticles with Modified Alternating Copolymers. Part 1: The Influence of the Grafting. Journal of Physical Chemistry C  114, 21900-21907.

Peterson, A.K., Morgan, D.G. and Skrabalak, S.E. (2010) Aerosol Synthesis of Porous Particles Using Simple Salts as a Pore Template. Langmuir 26, 8804-8809.

Shtykova E.V., Malyutin A., Dyke J., Stein B., Konarev P.V., Dragnea B., Svergun D.I. and Bronstein L.M. (2010) Hydrophilization of Magnetic Nanoparticles with Modified Alternating Copolymers. Part 2: Behavior in Solution. Journal of Physical Chemistry C 114,  21908-21913.

Sulman E.M., Matveeva V.G., Doluda V.Y.,  Sidorov A.I., Lakina N.V., Bykov A.V., Sulman M.G., Valetsky P. M., Kustov L.M., Tkachenko O.P., Stein, B.D. and Bronstein L. M. (2010) Efficient polymer-based nanocatalysts with enhanced catalytic performance in wet air oxidation of phenol. Applied Catalysis B - Environmental 94, 200-210.

2009

articles of interest for biology/structural biology EM:

Bourne, C.R., Katen, S.P., Fulz, M.R., Packianathan, C. and Zlotnick, A. (2009) A Mutant Hepatitis B Virus Core Protein Mimics Inhibitors of Icosahedral Capsid Self-Assembly. Biochemistry 48, 1736-1742.

Ranjith-Kumar, C.T., Murali, A., Dong, W., Srisathiyanarayanan, D., Vaughan, R., Ortiz-Alacantara, J., Bhardwaj, K., Li., X., Li, P. and Kao, C.C. 2009. Agonists and Antagonists Recognition by RIG-I, a  Cytoplasmic Innate Immunity Receptor. J. Biol. Chem.  284, 1155-1165.

Wei, Hui, Cheng, R.H., Berriman, J., Rice, W.J., Stokes, D.L., Katz, A., Morgan, D.G. and Gottlieb, P. (2009) Three-Dimensional Structure of the Enveloped Bacteriophage φ12: An Incomplete T=13 Lattice Is Superposed on an Enclosed T=1 Shell. PLoS ONE 4, e6850.

Yi, G. H., Letteney, E., Kim, C.-H., and Kao, C.C. (2009) Brome Mosaic  Virus Capsid Protein Regulates Translation of Viral Replication  Proteins by Binding to the Replicase Assembly RNA Element.  RNA 15,  615-626.

Yi, G., Vaughan, R.C., Yarbrough, I., Dharmaian, S., and Kao, C.C. (2009) RNA  Binding by the Brome Mosaic Virus Capsid Protein and the Regulation  of Viral RNA Accumulation. J. Mol. Biol. 391, 314-326.

articles of interest for materials science EM:

Herrera, M., Ramasse, Q.M., Morgan, D.G., Gonzalez, D., Pizarro, J., Yanez, A., Galindo, P., Garcia, R., Du, M.H., Zhang, S.B., Hopkinson, M., and . Browning, N.D (2009) Atomic scale high-angle annular dark field STEM analysis of the N configuration in dilute nitrides of GaAs. Physical Review B 80

Morgan, D.G., Ramasse, Q.M. and Browning, N.D. (2009) Application of Two-dimensional Crystallography and Image Processing to Atomic Resolution Z-Contrast Images. J. Electron Microscopy 58, 223-244.

Reed, B.W., Morgan, D.G., Okamoto, N.L., Kulkarni,A., Gates, B.C. and Browning, N.D. (2009) Validation and generalization of a method for precise size measurements of metal nanoclusters on supports. Ultramicroscopy 110, 48-60.

Ortalan,V., Herrera, M., Morgan, D.G. and. Browning, N.D.(2009) Application of image processing to STEM tomography of low-contrast materials. Ultramicroscopy 110, 67-81.

Sulman, E.M., Matveeva, V.G., Sulman, M.G., Demidenko, G.N., Valetsky, P.M., Stein, B., Mates, T., and Bronstein, L.M. (2009) Influence of Heterogenization on Catalytic Behavior of Mono- and Bimetallic Nanoparticles Formed in Poly(styrene)-block-poly(4-vinylpyridine) Micelles. J. Catalysis 262, 150-158.

2008

articles of interest for biology/structural biology EM:

Bourne, C.R., Lee, S., Venkataiah, B., Lee, A., Korba, B., Finn,  M.G., and Zlotnick, A. (2008) Small-Molecule Effectors of Hepatitis B  Virus Capsid Assembly Give Insight Into Virus Lifecycle. J. Virol.  82, 10262-10270.

Li, C., Wolgemuth C.W., Marko, M., Morgan, D.G. and Charon, N.W. (2008) Genetic Analysis of Spirochete Flagellin Proteins and Their Involvement in Motility, Filament Assembly, and Flagellar Morphology. J. Bact. 190, 5607-5615.

Gangloff, M., Murali, A., Xiong, J., Arnot, C.J., Weber, A.N., Sandercock, A.M., Robinson, C.V., Sarisky, R.T., A. Holzenburg, A., Kao, C. and Gay, N.J. (2008) Structural Insight into the  Mechanism of Activation of the Toll Receptor by the Dimeric Ligand  Spätzle.  J. Biol. Chem. 283, 14629-14635.

Mukherjee, S., Thorsteinsson, M.V., Johnston, L.B., DePhillips, P.A., and Zlotnick, A. (2008) A Quantitative Description of In Vitro Assembly of Human Papillomavirus 16 Virus-like Particles. J. Mol.  Biol. 381, 229-237.

Murali, A., Li, X., Ranjith-Kumar, C.T., Bhardwaj, K., Holzenburg, A., Li, P., and Kao, C. (2008)  Structure and Function of LGP2, a DExD/H  Helicase that Regulates the Innate Immunity Response. J. Biol. Chem.  283, 15825-15833.

Toh, E, Kurtz, H.D., Jr., and Brun, Y.V. (2008)  Characterization of  the Caulobacter crescentus Holdfast Polysaccharide Biosynthesis  Pathway Reveals Significant Redundancy in the Initiating  Glycosyltransferase and Polymerase steps.  J. Bact.  190, 7219-7231.

articles of interest for materials science EM:

Aberg, C.M., Seyam, M.A., Lassell, S.A., Bronstein, L.M., and Spontak, R.J. (2008) In situ Growth of Pd Nanoparticles in Crosslinked Polymer Matrices. Macromol. Rapid. Comm 29, 1926-1931.

Azzam, T., Bronstein, L., and Eisenberg, A. (2008) Water-Soluble Surface-Anchored Gold and Palladium Nanoparticles Stabilized by Exchange of Low Molecular Weight Ligands with Biamphiphilic Triblock Copolymers. Langmuir 24, 6521-6529.

Bronstein, L.M., Kostylev, M., Shtykova, E.V., Vlahu, T., Huang, X., Stein, B.D., Bykov, A., Remmes, N.B., Baxter, D.V., and Svergun, D.I. (2008) Mixed Co/Fe Oxide Nanoparticles in Block Copolymer Micelles. Langmuir 24, 12618-12626.

Herrera, M., Ortalan, V., Morgan, D.G., Browning, N.D. and Rupich, M.W. (2008) Observation of the Three-Dimensional Distribution of Flux-Pinning Centers in Dy-doped UBa2Cu3O7-x Coated Conductors.  J. App. Physics 103, 084301.

Korte, K., Skrabalak, S.E. and Xia, Y. (2008) Rapid Synthesis of Silver Nanowires by a CuCl- or CuCl2-Mediated Process. J. Mater. Chem. 18, 437-441.

Okamoto, N.L, Reed, B.W., Mehraeen, S., Kulkarni, A., Morgan, D.G., Gates, B.C. and Browning, N.D. (2008) Determination of Nanocluster Sixes from Dark-Field Scanning Transmission Electron Microscopy Images. J Phys. Chem. C 112, 1759-1763.

Shtykova, E.V., Huang, X., Gao, X., Dyke, J C., Schmucker, A.L., Dragnea, B., Remmes, N., Baxter, D.V., Stein, B., Konarev, P.V., Svergun, D.I., and Bronstein, L.M. (2008) Hydrophilic Monodisperse Magnetic Nanoparticles Protected by an Amphiphilic Alternating Copolymer. J. Phys. Chem. C 112, 16809-16817.


Wang, Y., Camargo, P.H.C., Skrabalak, S.E., Gu, H. and Xia, Y. (2008) A Facile, Water-Based Synthesis of Highly Branched Nanostructures of Silver. Langmuir 24, 12042-12046.

2007

articles of interest for biology/structural biology EM:

Goicochea, N.L., De, M., Rotello, V.M., Mukhopadhyay, S., and Dragnea, B. (2007) Core-like Particles of an Enveloped Animal Virus Can Self-assemble Efficiently on Artificial Templates. Nano Letters 7, 2281-2290.

Li, Z., Trimble, M., Brun, Y.V., and Jensen, G. (2007)  The Structure of FtsZ Filaments in vivo Suggests a Force-Generating Role in Cell Division.  EMBO Journal 26, 4694-4708.

Yi, G. and Kao, C. (2007). Selective Repression of Translation by the Brome Mosaic Virus 1a RNA Replication Protein. J. Virol. 81, 1601-1609.

articles of interest for materials science EM:

Bang, J.H., Han, K., Skrabalak, S.E., Kim, H. and Suslick, K.S. (2007) Porous Carbon Supports Prepared by Ultrasonic Spray Pyrolysis for Direct Methanol Fuel Cell Electrodes. J. Phys. Chem. C 111, 10959-10964.

Bronstein, L.M., Huang, X., Retrum, J., Schmucker, A., Pink, M., Stein, B.D., and Dragnea, B. (2007) Influence of Iron Oleate Complex Structure on Iron Oxide Nanoparticle Formation. Chem. Mater. 19, 3624-3632.

Goicochea, N.L., De, M., Rotello, V.M., Mukhopadhyay, S., and Dragnea, B. (2007) Core-like Particles of an Enveloped Animal Virus Can Self-assemble Efficiently on Artificial Templates. Nano Letters 7, 2281-2290.

Huang, X., Bronstein, L.M., Retrum, J., Dufort, C., Tsvetkova, I., Aniagyei, S., Stein, B., Stucky, G., McKenna, B., Remmes, N., Baxter, D., Kao, C.C., and Dragnea, B. (2007) Self-Assembled Virus-like Particles with Magnetic Cores. Nano Letters 7 2407–2416.

Skrabalak, S.E., Au, L., Li, X. and Xia, Y. (2007) Facile Synthesis of Ag Nanocubes and Au Nanocages. Nature Protocols 2, 2182-2190.

Shtykova, E.V., Huang, X., Remmes, N., Baxter, D., Stein, B., Dragnea, B., Svergun, D.I., and Bronstein, L.M. (2007) Structure and Properties of Iron Oxide Nanoparticles Encapsulated by Phospholipids with Poly(ethylene glycol) Tails. J. Phys. Chem. C 111, 18078-18086.

Soo, P.L., Sidorov, S.N., Mui, J., Bronstein, L.M., Vali, H., Eisenberg, A. and Maysinger, D. (2007) Gold-Labeled Block Copolymer Micelles Reveal Gold Aggregates at Multiple Subcellular Sites. Langmuir 23, 4830-4836.

Tsvetkova, I.B., Bronstein, L.M., Sidorov, S.N., Lependina, O.L., Sulman, M.G., Valetsky, P.M., Stein, B., Nikoshvili, L.Zh., Matveeva, V.G., Sidorov, A.I., Tikhonov, B.B., Demidenko, G.N., Kiwi-Minsker, L., and Sulman, E.M. (2007) Structure and Behavior of Nanoparticulate Catalysts Based on Ultrathin Chitosan Layers. J. Molec. Catal. A: Chem. 276, 116-129.

Yang, X., Skrabalak, S.E., Stein, E., Li, Z.-Y., Xia, Y. and Wang, L.V. (2007) Photoacoustic Tomography of a Rat Cerebral Cortex in vivo with Au Nanocages as an Optical Contrast Agent. Nano Letters 7, 3798-3802.